Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CRC | rs10674576 | chr5:54668310 | G/GTCTTTC | 6.03E-5 | 373 | 22.32 | 23.43 | 9.67 | KM Plot |
| CRC | rs10732745 | chr12:59970778 | C/T | 5.63E-5 | 374 | 11.58 | 18.53 | 24.93 | KM Plot |
| CRC | rs10735880 | chr12:59970843 | A/G | 5.63E-5 | 374 | 11.58 | 18.53 | 24.93 | KM Plot |
| CRC | rs10742609 | chr11:41909183 | G/A | 2.8E-7 | 368 | 17.23 | 22.4 | 22.7 | KM Plot |
| CRC | rs10747847 | chr12:59969179 | C/T | 1.04E-5 | 374 | 10.4 | 18.13 | 24.77 | KM Plot |
| CRC | rs10747848 | chr12:59969312 | C/T | 1.04E-5 | 374 | 10.4 | 18.13 | 24.77 | KM Plot |
| CRC | rs10747850 | chr12:59970888 | A/G | 5.63E-5 | 374 | 11.58 | 18.53 | 24.93 | KM Plot |
| CRC | rs10783988 | chr12:59969474 | C/T | 1.04E-5 | 374 | 10.4 | 18.13 | 24.77 | KM Plot |
| CRC | rs10783989 | chr12:59969483 | T/C | 1.04E-5 | 374 | 10.4 | 18.13 | 24.77 | KM Plot |
| CRC | rs10793188 | chr11:76428278 | C/T | 4.55E-5 | 366 | 22.4 | 20.08 | 11.68 | KM Plot |
| CRC | rs10866809 | chr7:61096477 | A/T | 1.17E-6 | 369 | 10.27 | 20.27 | 24.15 | KM Plot |
| CRC | rs10900324 | chr1:146675284 | C/T | 8.95E-6 | 372 | 10.6 | 26.12 | 21.9 | KM Plot |
| CRC | rs10941526 | chr5:40874078 | A/C | 3.62E-5 | 374 | 26.1 | 21.75 | 22.37 | KM Plot |
| CRC | rs111278368 | chr6:53530942 | T/C | 2.75E-5 | 372 | 22.3 | 24.77 | 7.13 | KM Plot |
| CRC | rs111326485 | chr15:83737729 | C/A | 0 | 366 | 22.33 | 23.3 | 1.22 | KM Plot |